Variant report

Variant	rs17392807
Chromosome Location	chr2:125413700-125413701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10195554	1.00[CHB][hapmap]
rs11123056	1.00[YRI][hapmap]
rs11675141	1.00[YRI][hapmap]
rs11676952	1.00[YRI][hapmap]
rs11679251	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12467127	0.81[TSI][hapmap]
rs12473828	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473959	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12995183	1.00[YRI][hapmap]
rs13033694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394146	1.00[YRI][hapmap]
rs1454133	1.00[YRI][hapmap]
rs1587788	1.00[YRI][hapmap]
rs1604806	1.00[YRI][hapmap]
rs17011825	0.95[ASN][1000 genomes]
rs17392884	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902004	1.00[YRI][hapmap]
rs2174251	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2174252	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs34027199	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4473385	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4848252	1.00[YRI][hapmap]
rs4848956	0.85[YRI][hapmap]
rs4848957	1.00[YRI][hapmap]
rs6737833	0.87[GIH][hapmap];1.00[JPT][hapmap]
rs768318	1.00[YRI][hapmap]
rs768319	0.85[YRI][hapmap]
rs924803	1.00[YRI][hapmap]
rs963190	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv979295	chr2:125406438-125414016	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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