Variant report
| Variant | rs6737833 |
|---|---|
| Chromosome Location | chr2:125361628-125361629 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11679251 | 1.00[JPT][hapmap] |
| rs11681388 | 0.91[YRI][hapmap] |
| rs12468779 | 0.89[YRI][hapmap] |
| rs12990799 | 0.83[MEX][hapmap] |
| rs13033694 | 1.00[JPT][hapmap] |
| rs17011800 | 0.90[ASN][1000 genomes] |
| rs17392807 | 0.87[GIH][hapmap];1.00[JPT][hapmap] |
| rs17392884 | 0.86[CEU][hapmap];1.00[JPT][hapmap] |
| rs2174251 | 0.86[CEU][hapmap];1.00[JPT][hapmap] |
| rs2174252 | 0.84[CEU][hapmap];0.88[JPT][hapmap] |
| rs4473385 | 0.87[GIH][hapmap];1.00[JPT][hapmap] |
| rs4588196 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834357 | chr2:125258157-125421507 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv528674 | chr2:125346337-125383522 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6737833 | GLI2 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
