Variant report
| Variant | rs12468779 |
|---|---|
| Chromosome Location | chr2:125349559-125349560 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10165603 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs10194805 | 0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10195187 | 0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11123053 | 0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs11123056 | 0.85[CEU][hapmap] |
| rs11676952 | 0.85[CEU][hapmap] |
| rs11681388 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap] |
| rs12466900 | 0.92[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs12470391 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12477053 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12990799 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1504022 | 0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1847432 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1910528 | 0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs2047874 | 0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs4848252 | 0.82[CEU][hapmap] |
| rs6541962 | 0.82[CEU][hapmap] |
| rs6737833 | 0.89[YRI][hapmap] |
| rs6750396 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7558706 | 0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs7584599 | 0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs7591540 | 0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834357 | chr2:125258157-125421507 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv528674 | chr2:125346337-125383522 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
