Variant report

Variant	rs7591540
Chromosome Location	chr2:125372088-125372089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10165603	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10194805	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195187	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196022	0.82[CEU][hapmap]
rs10206545	0.80[CEU][hapmap]
rs11123053	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11681388	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11686268	0.85[CEU][hapmap]
rs12466900	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468779	0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs12470391	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12477053	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12990799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1394142	0.82[CEU][hapmap]
rs1394143	0.80[CEU][hapmap]
rs1394146	0.84[CEU][hapmap]
rs1504022	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1847432	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1910528	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2047874	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6541962	0.93[CEU][hapmap]
rs6720324	0.80[CEU][hapmap]
rs6745271	0.80[CEU][hapmap]
rs6750396	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727179	0.80[CEU][hapmap]
rs7558706	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7578835	0.85[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7584599	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7605511	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv528674	chr2:125346337-125383522	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125371200-125373200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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