Variant report

Variant	rs1504022
Chromosome Location	chr2:125372020-125372021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10165603	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10194805	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs10195187	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs11123053	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11681388	0.88[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs12466900	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs12468779	0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs12470391	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477053	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990799	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1394146	0.87[CEU][hapmap]
rs1604806	0.82[CEU][hapmap]
rs1847432	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910528	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2047874	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4848249	0.81[CEU][hapmap]
rs4848947	0.89[CEU][hapmap]
rs4848957	0.82[CEU][hapmap]
rs6541962	0.85[CEU][hapmap]
rs6707181	0.88[CEU][hapmap]
rs6707400	0.89[CEU][hapmap]
rs6727845	0.87[CEU][hapmap]
rs6750396	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558706	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7584599	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7591540	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs924803	0.82[CEU][hapmap]
rs963189	0.82[CEU][hapmap]
rs963190	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv528674	chr2:125346337-125383522	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125371200-125373200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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