Variant report

Variant	rs6541962
Chromosome Location	chr2:125350030-125350031
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10165603	1.00[CEU][hapmap]
rs10184472	0.86[CEU][hapmap]
rs10194805	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10195187	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10196022	0.85[CEU][hapmap]
rs10202655	0.82[CEU][hapmap]
rs10202736	0.82[CEU][hapmap]
rs10206545	0.86[CEU][hapmap]
rs11123053	1.00[CEU][hapmap]
rs11686268	0.88[CEU][hapmap]
rs12466900	0.96[CEU][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12468779	0.82[CEU][hapmap]
rs12470391	0.80[CEU][hapmap];0.93[ASN][1000 genomes]
rs12477053	0.95[ASN][1000 genomes]
rs12990799	0.97[ASN][1000 genomes]
rs1394141	0.86[CEU][hapmap]
rs1394142	0.89[CEU][hapmap]
rs1394143	0.86[CEU][hapmap]
rs1394146	0.80[CEU][hapmap]
rs1504015	0.82[CEU][hapmap]
rs1504022	0.85[CEU][hapmap];0.95[ASN][1000 genomes]
rs1587789	0.82[CEU][hapmap]
rs1847432	0.95[ASN][1000 genomes]
rs1910528	1.00[CEU][hapmap]
rs2047874	1.00[CEU][hapmap]
rs4848251	0.86[CEU][hapmap]
rs4848950	0.82[CEU][hapmap]
rs4848953	0.83[CEU][hapmap]
rs6541966	0.82[CEU][hapmap]
rs6712020	0.82[CEU][hapmap]
rs6720324	0.86[CEU][hapmap]
rs6721614	0.82[CEU][hapmap]
rs6739364	0.82[CEU][hapmap]
rs6745271	0.86[CEU][hapmap]
rs6750396	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6751507	0.82[CEU][hapmap]
rs6754751	0.83[CEU][hapmap]
rs727179	0.86[CEU][hapmap]
rs727180	0.86[CEU][hapmap]
rs7558706	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7560341	0.85[CEU][hapmap]
rs7564755	0.86[CEU][hapmap]
rs7578835	0.85[CEU][hapmap]
rs7584599	1.00[CEU][hapmap]
rs7586683	0.86[CEU][hapmap]
rs7591540	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7599608	0.83[CEU][hapmap]
rs7605511	0.89[CEU][hapmap]
rs924802	0.85[CEU][hapmap]
rs936028	0.83[CEU][hapmap]
rs936029	0.83[CEU][hapmap]
rs9646915	0.85[CEU][hapmap]
rs9646916	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528674	chr2:125346337-125383522	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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