Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10165603	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs10194805	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs10195187	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs11123053	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs11681388	0.81[JPT][hapmap]
rs12466900	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs12618619	0.81[CEU][hapmap]
rs12990799	0.81[JPT][hapmap]
rs1504019	0.81[CEU][hapmap]
rs1504020	0.81[CEU][hapmap]
rs1910528	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs2047874	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs4364025	0.81[CEU][hapmap]
rs4848940	0.81[CEU][hapmap]
rs6541962	0.85[CEU][hapmap]
rs6744929	0.81[CEU][hapmap]
rs6757634	0.81[CEU][hapmap]
rs6757796	0.81[CEU][hapmap]
rs7558706	0.85[CEU][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs7584599	0.85[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs7591540	0.85[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv528674	chr2:125346337-125383522	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125373200-125373800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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