Variant report

Variant	rs17392884
Chromosome Location	chr2:125425451-125425452
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10195554	0.82[CHB][hapmap]
rs11679251	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12473828	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473959	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13033694	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011825	0.95[ASN][1000 genomes]
rs17392807	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2174251	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2174252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs34027199	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4473385	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588196	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs6737833	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs768318	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs768319	0.84[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125421600-125425600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:125424800-125425800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:125425000-125426000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:125425400-125426600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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