Variant report

Variant	rs17393557
Chromosome Location	chr2:125513693-125513694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10178249	1.00[JPT][hapmap]
rs11123058	1.00[JPT][hapmap]
rs11902093	1.00[JPT][hapmap]
rs13002390	1.00[JPT][hapmap]
rs13020806	1.00[JPT][hapmap]
rs13407611	1.00[JPT][hapmap]
rs1454134	1.00[JPT][hapmap]
rs17320899	1.00[JPT][hapmap]
rs17393704	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1993272	1.00[JPT][hapmap]
rs1993273	1.00[JPT][hapmap]
rs6755119	1.00[JPT][hapmap]
rs7580383	1.00[JPT][hapmap]
rs766312	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125513000-125513800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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