Variant report

Variant	rs17399616
Chromosome Location	chr11:10395597-10395598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61891808	1.00[AMR][1000 genomes]
rs61891809	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61891810	1.00[AMR][1000 genomes]
rs61891811	1.00[AMR][1000 genomes]
rs61891813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61891815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61891816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10388600-10396200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10388800-10401400	Weak transcription	Esophagus	oesophagus
3	chr11:10389000-10401400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:10389000-10401600	Weak transcription	Right Atrium	heart
5	chr11:10391800-10396000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:10391800-10403800	Enhancers	Adipose Nuclei	Adipose
7	chr11:10392000-10398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10392600-10396200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:10392800-10403000	Enhancers	NHLF	lung
10	chr11:10393800-10395800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:10394200-10396200	Enhancers	Rectal Smooth Muscle	rectum
12	chr11:10394600-10396600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:10394600-10402200	Enhancers	NHDF-Ad	bronchial
14	chr11:10394600-10403000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:10394800-10397200	Enhancers	Osteobl	bone
16	chr11:10394800-10398400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:10394800-10398400	Enhancers	Colon Smooth Muscle	Colon
18	chr11:10394800-10399200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:10394800-10399400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:10395000-10395800	Enhancers	Right Ventricle	heart
21	chr11:10395200-10395800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:10395200-10396000	Weak transcription	Ovary	ovary
23	chr11:10395200-10396200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:10395200-10396200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr11:10395200-10396200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:10395200-10396200	Weak transcription	Spleen	Spleen
27	chr11:10395200-10396400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:10395200-10396600	Weak transcription	HSMMtube	muscle
29	chr11:10395200-10397200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:10395200-10400600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:10395200-10401400	Weak transcription	Left Ventricle	heart
32	chr11:10395200-10401400	Weak transcription	Lung	lung
33	chr11:10395400-10395800	Weak transcription	Psoas Muscle	Psoas
34	chr11:10395400-10395800	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links