Variant report

Variant	rs61891813
Chromosome Location	chr11:10400947-10400948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10389794..10392279-chr11:10398849..10401977,3	MCF-7	breast:
2	chr11:10397046..10398649-chr11:10399369..10401116,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17399616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61891808	1.00[AMR][1000 genomes]
rs61891809	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61891810	1.00[AMR][1000 genomes]
rs61891811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10388800-10401400	Weak transcription	Esophagus	oesophagus
2	chr11:10389000-10401400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:10389000-10401600	Weak transcription	Right Atrium	heart
4	chr11:10391800-10403800	Enhancers	Adipose Nuclei	Adipose
5	chr11:10392800-10403000	Enhancers	NHLF	lung
6	chr11:10394600-10402200	Enhancers	NHDF-Ad	bronchial
7	chr11:10394600-10403000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:10395200-10401400	Weak transcription	Left Ventricle	heart
9	chr11:10395200-10401400	Weak transcription	Lung	lung
10	chr11:10397400-10401200	Weak transcription	NHEK	skin
11	chr11:10397400-10401400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:10398000-10401400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:10398000-10401400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:10398000-10401600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10398000-10403800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:10398000-10404000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10398000-10404000	Enhancers	Osteobl	bone
18	chr11:10398400-10401400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:10398400-10401600	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:10398600-10403200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:10399200-10401200	Weak transcription	HUVEC	blood vessel
22	chr11:10399200-10401600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:10399400-10403200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:10399400-10403800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:10399800-10401800	Enhancers	NH-A	brain
26	chr11:10399800-10402800	Enhancers	HSMMtube	muscle
27	chr11:10400000-10403000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:10400400-10401400	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:10400600-10401000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:10400600-10401000	Weak transcription	HSMM	muscle
31	chr11:10400600-10401400	Weak transcription	Fetal Stomach	stomach
32	chr11:10400600-10407200	Weak transcription	Ovary	ovary
33	chr11:10400800-10401200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:10400800-10401200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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