Variant report

Variant	rs17407366
Chromosome Location	chr5:108356460-108356461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108354824..108357149-chr5:108357677..108359778,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10036583	1.00[CHB][hapmap]
rs10037675	1.00[CHB][hapmap]
rs10039951	1.00[CHB][hapmap]
rs10042152	1.00[CHB][hapmap]
rs10052208	1.00[CHB][hapmap]
rs10052531	1.00[CHB][hapmap]
rs10057719	0.85[JPT][hapmap]
rs10064960	1.00[CHB][hapmap]
rs10065611	1.00[CHB][hapmap]
rs13358881	1.00[CHB][hapmap]
rs13359423	1.00[CHB][hapmap]
rs1423459	1.00[CHB][hapmap]
rs17161540	1.00[CHB][hapmap]
rs17161593	0.86[CEU][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap]
rs17450138	0.88[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap]
rs2228972	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs35141056	1.00[CHB][hapmap]
rs3816024	0.83[LWK][hapmap]
rs41508849	1.00[CHB][hapmap]
rs4358573	1.00[CHB][hapmap]
rs4560594	1.00[CHB][hapmap]
rs4560595	1.00[CHB][hapmap]
rs4957796	0.85[JPT][hapmap]
rs62377124	0.83[AFR][1000 genomes]
rs62377126	0.94[AFR][1000 genomes]
rs6594341	1.00[CHB][hapmap]
rs6873130	1.00[CHB][hapmap]
rs7709144	1.00[CHB][hapmap]
rs7719329	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7720808	0.85[JPT][hapmap]
rs9326750	1.00[CHB][hapmap]
rs9326752	1.00[CHB][hapmap]
rs975056	0.88[CHD][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv4952	chr5:108324146-108369353	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108301600-108361200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:108329600-108359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:108332600-108359400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:108332800-108359800	Weak transcription	Adipose Nuclei	Adipose
5	chr5:108341000-108360000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:108341200-108359800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:108341800-108359400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:108342200-108359800	Weak transcription	NHEK	skin
9	chr5:108346400-108359800	Weak transcription	Left Ventricle	heart
10	chr5:108349800-108357600	Weak transcription	Aorta	Aorta
11	chr5:108350400-108359800	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:108350800-108390400	Weak transcription	HSMMtube	muscle
13	chr5:108351400-108359800	Weak transcription	Pancreas	Pancrea
14	chr5:108352000-108359800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:108352200-108359000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:108352200-108359800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:108352200-108359800	Weak transcription	Brain Angular Gyrus	brain
18	chr5:108352200-108360000	Weak transcription	Brain Anterior Caudate	brain
19	chr5:108352400-108359400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:108352400-108360000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:108352400-108365000	Weak transcription	Fetal Intestine Large	intestine
22	chr5:108352400-108381400	Weak transcription	Fetal Lung	lung
23	chr5:108352800-108357800	Weak transcription	Right Atrium	heart
24	chr5:108352800-108359800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:108352800-108359800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr5:108352800-108360000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:108353000-108360000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr5:108354800-108359800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:108355200-108363800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr5:108355600-108359800	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:108356000-108399000	Weak transcription	HSMM	muscle
32	chr5:108356400-108364200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:108356400-108389200	Weak transcription	Primary B cells from cord blood	blood

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