Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10064014	1.00[ASN][1000 genomes]
rs17161562	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs17407366	0.86[CEU][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap]
rs17450138	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs17450345	0.81[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap]
rs35141056	0.85[JPT][hapmap]
rs3816024	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes]
rs4358573	0.85[JPT][hapmap]
rs4560594	0.82[JPT][hapmap]
rs4560595	0.85[JPT][hapmap]
rs4957796	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs62375529	0.94[AFR][1000 genomes]
rs6594341	0.85[JPT][hapmap]
rs6873130	0.84[JPT][hapmap]
rs73779124	0.84[AMR][1000 genomes]
rs73779132	0.84[AMR][1000 genomes]
rs7719329	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[YRI][hapmap]
rs7720808	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7729739	0.85[AFR][1000 genomes]
rs9326752	0.85[JPT][hapmap]
rs975056	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
2	chr5:108388800-108412000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:108405600-108415400	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:108409600-108415400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:108410200-108415400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:108410600-108415000	Weak transcription	Fetal Heart	heart

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