Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108432296..108433865-chr5:108435051..108437891,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10043540	0.91[CHD][hapmap]
rs10070411	0.80[ASN][1000 genomes]
rs10073414	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10477945	0.81[YRI][hapmap]
rs11746665	0.95[ASN][1000 genomes]
rs17161593	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes]
rs17407366	0.83[LWK][hapmap]
rs17450138	0.82[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap]
rs17450345	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17450387	1.00[ASW][hapmap];0.91[CHD][hapmap]
rs17450455	0.87[ASN][1000 genomes]
rs2195944	1.00[ASW][hapmap];0.91[CHD][hapmap]
rs2217649	0.91[CHD][hapmap]
rs2416200	1.00[ASW][hapmap];0.91[CHD][hapmap];0.81[YRI][hapmap]
rs4957567	0.91[CHD][hapmap]
rs4957796	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs4957798	0.91[CHD][hapmap]
rs4957799	0.86[JPT][hapmap];0.93[YRI][hapmap]
rs57960033	0.83[AFR][1000 genomes]
rs73779040	0.83[AFR][1000 genomes]
rs73779124	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73779132	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7719329	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs7720808	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9326759	1.00[ASW][hapmap];0.91[CHD][hapmap]
rs975056	0.82[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:108416400-108441200	Weak transcription	HSMM	muscle
3	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
4	chr5:108426000-108441400	Weak transcription	Aorta	Aorta
5	chr5:108427400-108441200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108427400-108441400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:108433400-108441400	Weak transcription	Fetal Heart	heart
8	chr5:108435000-108436400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:108435200-108437800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:108435200-108437800	Weak transcription	NHDF-Ad	bronchial
11	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:108436000-108436200	Enhancers	Rectal Smooth Muscle	rectum

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