Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10040959	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10043540	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10056058	0.86[ASN][1000 genomes]
rs10063845	0.84[JPT][hapmap]
rs10073414	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10477945	0.86[JPT][hapmap]
rs11746665	0.86[ASN][1000 genomes]
rs17161593	0.81[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap]
rs17450138	0.81[CHD][hapmap];0.81[MEX][hapmap]
rs17450387	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17450455	0.86[ASN][1000 genomes]
rs17473391	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2195944	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs2217649	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs2416200	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs3816024	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4957567	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs4957798	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[ASN][1000 genomes]
rs4957799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73779124	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73779132	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7719329	0.81[CHD][hapmap]
rs9326759	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs9326760	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs975056	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
2	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:108441400-108445400	Enhancers	Fetal Heart	heart
4	chr5:108441600-108447400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:108441600-108455600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108441800-108455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:108442000-108445000	Weak transcription	Brain Anterior Caudate	brain
8	chr5:108442000-108446800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:108442000-108497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:108442200-108444200	Enhancers	HUVEC	blood vessel
11	chr5:108442400-108449000	Weak transcription	Pancreas	Pancrea
12	chr5:108442600-108443600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:108442600-108444200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:108442800-108445200	Weak transcription	Osteobl	bone
15	chr5:108442800-108446000	Weak transcription	HSMM	muscle
16	chr5:108442800-108455600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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