Variant report

Variant	rs17408514
Chromosome Location	chr1:165563856-165563857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs41267558	1.00[AMR][1000 genomes]
rs72692034	1.00[AMR][1000 genomes]
rs72696033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696036	0.95[EUR][1000 genomes]
rs72696037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696040	1.00[EUR][1000 genomes]
rs72696057	1.00[EUR][1000 genomes]
rs9333470	1.00[EUR][1000 genomes]
rs9333475	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas
2	chr1:165562800-165566600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:165563000-165564200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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