Variant report

Variant	rs17414604
Chromosome Location	chr7:136682188-136682189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1035609	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17498745	0.81[EUR][1000 genomes]
rs17499892	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs324635	0.83[ASN][1000 genomes]
rs324637	0.83[ASN][1000 genomes]
rs420817	0.83[ASN][1000 genomes]
rs4341110	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62487063	0.90[EUR][1000 genomes]
rs62487065	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6963577	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7357341	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136666400-136685400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:136674800-136694200	Weak transcription	Left Ventricle	heart
3	chr7:136678400-136685600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:136681400-136683000	Enhancers	Colon Smooth Muscle	Colon
5	chr7:136681400-136683000	Enhancers	Fetal Heart	heart
6	chr7:136681400-136683200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:136681400-136683800	Enhancers	NHLF	lung
8	chr7:136681600-136682800	Enhancers	Rectal Smooth Muscle	rectum
9	chr7:136681800-136683200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:136681800-136684000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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