Variant report

Variant	rs324635
Chromosome Location	chr7:136684235-136684236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17414604	0.83[ASN][1000 genomes]
rs324637	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324639	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs324640	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs324642	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs324643	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs324644	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs324645	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs324650	0.86[EUR][1000 genomes]
rs420817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421325	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136666400-136685400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:136674800-136694200	Weak transcription	Left Ventricle	heart
3	chr7:136678400-136685600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:136682400-136684800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr7:136682600-136685800	Weak transcription	NH-A	brain
6	chr7:136682800-136685400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:136683000-136684600	Weak transcription	Fetal Heart	heart
8	chr7:136683000-136685400	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:136683200-136685800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:136683200-136685800	Weak transcription	Osteobl	bone
11	chr7:136683600-136685800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:136683800-136685800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:136683800-136685800	Weak transcription	NHLF	lung
14	chr7:136683800-136686000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:136684000-136685800	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links