Variant report

Variant	rs324640
Chromosome Location	chr7:136688996-136688997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10243944	1.00[CHB][hapmap]
rs1035609	1.00[JPT][hapmap]
rs11982108	1.00[CHB][hapmap]
rs12532092	1.00[CHB][hapmap]
rs12532094	1.00[CHB][hapmap]
rs12536267	1.00[CHB][hapmap]
rs12536293	1.00[CHB][hapmap]
rs12536315	1.00[CHB][hapmap]
rs12536341	1.00[CHB][hapmap]
rs13235468	1.00[CHB][hapmap]
rs1364405	1.00[CHB][hapmap]
rs1469179	1.00[CHB][hapmap]
rs17412549	1.00[CHB][hapmap]
rs17496844	1.00[CHB][hapmap]
rs17496997	1.00[CHB][hapmap]
rs17497143	1.00[CHB][hapmap]
rs17497261	1.00[CHB][hapmap]
rs17499892	1.00[JPT][hapmap]
rs324635	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs324636	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs324637	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs324639	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs324642	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324643	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324645	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324649	1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs324650	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs420817	0.91[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs421325	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4341110	1.00[JPT][hapmap]
rs6947206	1.00[CHB][hapmap]
rs6963577	1.00[JPT][hapmap]
rs7357341	1.00[JPT][hapmap]
rs7800170	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136674800-136694200	Weak transcription	Left Ventricle	heart
2	chr7:136684800-136689000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:136686200-136689200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:136686200-136690600	Weak transcription	Right Ventricle	heart
5	chr7:136686200-136691000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:136686200-136692200	Weak transcription	Ovary	ovary
7	chr7:136686400-136692000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:136686600-136690400	Weak transcription	Fetal Stomach	stomach
9	chr7:136686600-136691000	Weak transcription	Osteobl	bone
10	chr7:136687600-136694400	Enhancers	Fetal Heart	heart
11	chr7:136687800-136689400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:136688200-136689000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:136688200-136689800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:136688400-136689200	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:136688400-136690600	Weak transcription	NHLF	lung
16	chr7:136688600-136690800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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