Variant report

Variant	rs17415835
Chromosome Location	chr10:45376994-45376995
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12772980	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1325161	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1332624	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1332626	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17416363	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17507375	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17507956	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1977584	0.81[EUR][1000 genomes]
rs34346133	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58414517	0.87[EUR][1000 genomes]
rs61852544	0.83[AFR][1000 genomes]
rs61852546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61853972	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61853973	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61853975	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61853976	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7074794	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73277463	0.84[EUR][1000 genomes]
rs7903148	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1050496	chr10:45227530-45382154	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45374800-45379200	Enhancers	Pancreas	Pancrea
2	chr10:45374800-45381600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:45375000-45378200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:45375200-45377000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:45375200-45377000	Weak transcription	Fetal Thymus	thymus
6	chr10:45375200-45377200	Weak transcription	Left Ventricle	heart
7	chr10:45375200-45378800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:45375200-45398600	Weak transcription	Right Atrium	heart
9	chr10:45375400-45377000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:45375400-45377200	Weak transcription	Fetal Heart	heart
11	chr10:45375400-45377400	Weak transcription	Right Ventricle	heart
12	chr10:45375800-45384200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:45376200-45389600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:45376800-45377800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:45376800-45379400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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