Variant report

Variant	rs34346133
Chromosome Location	chr10:45372990-45372991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12772980	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1325161	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17415835	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17416363	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17507375	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17507956	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61852544	0.83[AFR][1000 genomes]
rs61852546	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61853972	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61853973	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61853975	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61853976	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7903148	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052977	chr10:45203117-45373945	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052669	chr10:45208025-45373945	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044334	chr10:45210690-45373945	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1050496	chr10:45227530-45382154	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45361000-45374000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:45365200-45374000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:45369400-45374000	Weak transcription	Brain Angular Gyrus	brain
4	chr10:45369600-45374000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:45370000-45373800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:45370000-45374000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:45370000-45374000	Weak transcription	Liver	Liver
8	chr10:45370000-45374000	Weak transcription	Brain Substantia Nigra	brain
9	chr10:45370000-45374000	Weak transcription	Fetal Lung	lung
10	chr10:45370000-45374000	Weak transcription	HSMMtube	muscle
11	chr10:45370000-45374400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:45370200-45373800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:45370200-45374000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:45370200-45374000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:45370200-45374000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:45370200-45374000	Weak transcription	Fetal Brain Female	brain
17	chr10:45370200-45374000	Weak transcription	Fetal Stomach	stomach
18	chr10:45370200-45374000	Weak transcription	Ovary	ovary
19	chr10:45370200-45374000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:45370400-45373400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:45370400-45374000	Weak transcription	HepG2	liver
22	chr10:45370600-45373800	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:45370600-45374000	Weak transcription	Fetal Heart	heart
24	chr10:45370600-45374000	Weak transcription	Left Ventricle	heart
25	chr10:45370600-45374000	Weak transcription	Psoas Muscle	Psoas
26	chr10:45370600-45374000	Weak transcription	Right Ventricle	heart
27	chr10:45370600-45374200	Weak transcription	Right Atrium	heart
28	chr10:45371400-45374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:45372200-45374000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:45372200-45374000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:45372200-45374000	Weak transcription	Gastric	stomach
32	chr10:45372800-45374000	Weak transcription	Pancreas	Pancrea

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