Variant report

Variant	rs61852544
Chromosome Location	chr10:45370374-45370375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1002321	0.89[EUR][1000 genomes]
rs1018702	0.87[EUR][1000 genomes]
rs1034161	0.96[EUR][1000 genomes]
rs10508890	0.89[EUR][1000 genomes]
rs11239241	1.00[ASN][1000 genomes]
rs11239243	1.00[ASN][1000 genomes]
rs11239244	1.00[ASN][1000 genomes]
rs11239292	1.00[ASN][1000 genomes]
rs12248300	1.00[ASN][1000 genomes]
rs12248312	1.00[ASN][1000 genomes]
rs12254449	1.00[ASN][1000 genomes]
rs12256226	1.00[ASN][1000 genomes]
rs12261254	1.00[ASN][1000 genomes]
rs12266568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772980	0.83[AFR][1000 genomes]
rs1325159	1.00[ASN][1000 genomes]
rs1325170	0.89[EUR][1000 genomes]
rs17157164	0.89[EUR][1000 genomes]
rs17415835	0.83[AFR][1000 genomes]
rs1855111	1.00[ASN][1000 genomes]
rs34346133	0.83[AFR][1000 genomes]
rs41301593	1.00[ASN][1000 genomes]
rs55855984	1.00[ASN][1000 genomes]
rs55972562	1.00[ASN][1000 genomes]
rs56036568	1.00[ASN][1000 genomes]
rs56045515	1.00[ASN][1000 genomes]
rs56056231	1.00[ASN][1000 genomes]
rs56194192	1.00[ASN][1000 genomes]
rs56317408	1.00[ASN][1000 genomes]
rs61852469	1.00[ASN][1000 genomes]
rs61852472	1.00[ASN][1000 genomes]
rs61852502	1.00[ASN][1000 genomes]
rs61852506	1.00[ASN][1000 genomes]
rs61852512	1.00[ASN][1000 genomes]
rs61852533	1.00[ASN][1000 genomes]
rs61852535	1.00[ASN][1000 genomes]
rs61852541	1.00[ASN][1000 genomes]
rs61852542	1.00[ASN][1000 genomes]
rs61852546	0.83[AFR][1000 genomes]
rs6593443	1.00[ASN][1000 genomes]
rs7067638	1.00[ASN][1000 genomes]
rs7068975	1.00[ASN][1000 genomes]
rs7069436	1.00[ASN][1000 genomes]
rs7073488	1.00[ASN][1000 genomes]
rs7076361	1.00[ASN][1000 genomes]
rs7077518	1.00[ASN][1000 genomes]
rs7077750	1.00[ASN][1000 genomes]
rs7082163	1.00[ASN][1000 genomes]
rs7083891	1.00[ASN][1000 genomes]
rs7089416	1.00[ASN][1000 genomes]
rs7097670	1.00[ASN][1000 genomes]
rs7101319	1.00[ASN][1000 genomes]
rs7894589	1.00[ASN][1000 genomes]
rs7894867	1.00[ASN][1000 genomes]
rs7909031	1.00[ASN][1000 genomes]
rs7910103	0.88[EUR][1000 genomes]
rs7917814	1.00[ASN][1000 genomes]
rs7918692	1.00[ASN][1000 genomes]
rs955649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760155	chr10:45203117-45371777	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1050711	chr10:45203117-45371777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1052977	chr10:45203117-45373945	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1037692	chr10:45208025-45371777	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1052669	chr10:45208025-45373945	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1044334	chr10:45210690-45373945	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1050496	chr10:45227530-45382154	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1038316	chr10:45247684-45371316	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv540585	chr10:45247684-45371316	Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45361000-45374000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:45365200-45374000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:45368000-45370400	Enhancers	Stomach Smooth Muscle	stomach
4	chr10:45368400-45370600	Enhancers	Fetal Heart	heart
5	chr10:45368600-45370600	Enhancers	Left Ventricle	heart
6	chr10:45368600-45370600	Enhancers	Pancreas	Pancrea
7	chr10:45368600-45370600	Enhancers	Psoas Muscle	Psoas
8	chr10:45368600-45370600	Enhancers	Right Ventricle	heart
9	chr10:45368600-45371600	Weak transcription	Gastric	stomach
10	chr10:45369200-45370600	Enhancers	Right Atrium	heart
11	chr10:45369400-45374000	Weak transcription	Brain Angular Gyrus	brain
12	chr10:45369600-45374000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:45369800-45370600	Enhancers	Aorta	Aorta
14	chr10:45369800-45370600	Enhancers	Lung	lung
15	chr10:45370000-45370400	Enhancers	HepG2	liver
16	chr10:45370000-45373800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:45370000-45374000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:45370000-45374000	Weak transcription	Liver	Liver
19	chr10:45370000-45374000	Weak transcription	Brain Substantia Nigra	brain
20	chr10:45370000-45374000	Weak transcription	Fetal Lung	lung
21	chr10:45370000-45374000	Weak transcription	HSMMtube	muscle
22	chr10:45370000-45374400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:45370200-45373800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:45370200-45374000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:45370200-45374000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:45370200-45374000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:45370200-45374000	Weak transcription	Fetal Brain Female	brain
28	chr10:45370200-45374000	Weak transcription	Fetal Stomach	stomach
29	chr10:45370200-45374000	Weak transcription	Ovary	ovary
30	chr10:45370200-45374000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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