Variant report

Variant	rs41301593
Chromosome Location	chr10:45466743-45466744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:45466471-45475094	HepG2	liver:	n/a	n/a
2	POLR2A	chr10:45466202-45474927	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45466696..45473467-chr10:45492241..45499604,15	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf10-3	chr10:45466429-45467123	NONHSAT013051

Variant related genes	Relation type
RASSF4	TF binding region
ENSG00000165511	Chromatin interaction
ENSG00000165512	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11239243	1.00[ASN][1000 genomes]
rs11239244	1.00[ASN][1000 genomes]
rs11239292	1.00[ASN][1000 genomes]
rs12248300	1.00[ASN][1000 genomes]
rs12248312	1.00[ASN][1000 genomes]
rs12266568	1.00[ASN][1000 genomes]
rs1855111	1.00[ASN][1000 genomes]
rs55855984	1.00[ASN][1000 genomes]
rs55972562	1.00[ASN][1000 genomes]
rs56036568	1.00[ASN][1000 genomes]
rs56045515	1.00[ASN][1000 genomes]
rs56056231	1.00[ASN][1000 genomes]
rs56194192	1.00[ASN][1000 genomes]
rs56317408	1.00[ASN][1000 genomes]
rs61852502	1.00[ASN][1000 genomes]
rs61852506	1.00[ASN][1000 genomes]
rs61852512	1.00[ASN][1000 genomes]
rs61852533	1.00[ASN][1000 genomes]
rs61852535	1.00[ASN][1000 genomes]
rs61852541	1.00[ASN][1000 genomes]
rs61852542	1.00[ASN][1000 genomes]
rs61852544	1.00[ASN][1000 genomes]
rs6593443	1.00[ASN][1000 genomes]
rs7067638	1.00[ASN][1000 genomes]
rs7068975	1.00[ASN][1000 genomes]
rs7069436	1.00[ASN][1000 genomes]
rs7073488	1.00[ASN][1000 genomes]
rs7077518	1.00[ASN][1000 genomes]
rs7077750	1.00[ASN][1000 genomes]
rs7082163	1.00[ASN][1000 genomes]
rs7083891	1.00[ASN][1000 genomes]
rs7089416	1.00[ASN][1000 genomes]
rs7101319	1.00[ASN][1000 genomes]
rs7894589	1.00[ASN][1000 genomes]
rs7894867	1.00[ASN][1000 genomes]
rs7909031	1.00[ASN][1000 genomes]
rs7917814	1.00[ASN][1000 genomes]
rs7918692	1.00[ASN][1000 genomes]
rs955649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1035235	chr10:45442303-45467948	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45460000-45470000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:45460400-45469800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:45461200-45468200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:45461400-45467000	Weak transcription	Brain Germinal Matrix	brain
5	chr10:45461400-45468400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:45461400-45468600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:45461400-45468800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:45461600-45468400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:45461600-45468600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:45462000-45468400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:45462000-45469800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:45462200-45468600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:45462800-45468400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:45462800-45469600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:45463600-45468400	Strong transcription	Fetal Intestine Small	intestine
16	chr10:45464000-45468600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:45464200-45466800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:45464200-45467000	Genic enhancers	Lung	lung
19	chr10:45464200-45467000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:45464200-45468600	Weak transcription	Stomach Mucosa	stomach
21	chr10:45464200-45469400	Weak transcription	NHDF-Ad	bronchial
22	chr10:45464200-45469800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:45464200-45469800	Weak transcription	Osteobl	bone
24	chr10:45464400-45467000	Weak transcription	HSMM	muscle
25	chr10:45464400-45467600	Genic enhancers	Placenta	Placenta
26	chr10:45464400-45467800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:45464400-45469800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:45464600-45466800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:45464600-45467400	Strong transcription	Gastric	stomach
30	chr10:45464600-45468000	Strong transcription	HepG2	liver
31	chr10:45464600-45468200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:45464600-45468400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:45464600-45469000	Weak transcription	Small Intestine	intestine
34	chr10:45464600-45469200	Weak transcription	Fetal Lung	lung
35	chr10:45464600-45469400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:45464600-45469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:45464600-45469600	Weak transcription	Fetal Brain Male	brain
38	chr10:45464600-45470000	Weak transcription	Fetal Kidney	kidney
39	chr10:45464600-45470000	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr10:45464800-45468000	Weak transcription	Fetal Heart	heart
41	chr10:45464800-45468200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr10:45464800-45468400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr10:45464800-45469400	Genic enhancers	Primary monocytes fromperipheralblood	blood
44	chr10:45464800-45469800	Weak transcription	NHLF	lung
45	chr10:45464800-45470000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:45465000-45468400	Weak transcription	Primary B cells from cord blood	blood
47	chr10:45465000-45468600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:45465000-45468800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:45465000-45469200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:45465000-45469400	Weak transcription	Primary T cells from cord blood	blood

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