Variant report

Variant	rs17419930
Chromosome Location	chr10:89873699-89873700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89871797..89873959-chr10:89875999..89877551,2	K562	blood:
2	chr10:89620655..89622338-chr10:89871655..89874037,2	K562	blood:
3	chr10:89872939..89875785-chr10:89888334..89891618,3	MCF-7	breast:
4	chr10:89620841..89625888-chr10:89873162..89876316,7	MCF-7	breast:
5	chr10:89620141..89628673-chr10:89867993..89880509,31	MCF-7	breast:
6	chr10:89873098..89874666-chr10:90125714..90128482,2	MCF-7	breast:
7	chr10:89872459..89874892-chr10:89876051..89878099,2	K562	blood:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11593673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573738	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17322521	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322612	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225796	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55722339	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55727359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56221718	0.85[AMR][1000 genomes]
rs56375327	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079675	0.81[EUR][1000 genomes]
rs72816194	0.86[EUR][1000 genomes]
rs7899035	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905605	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
2	chr10:89867800-89873800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:89868000-89873800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:89868200-89876200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:89868400-89874000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:89868400-89876800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:89869600-89881400	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:89870800-89874000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:89870800-89875200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:89870800-89875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:89870800-89875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:89870800-89875400	Weak transcription	NH-A	brain
13	chr10:89870800-89875400	Weak transcription	NHEK	skin
14	chr10:89870800-89875600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:89871000-89874800	Weak transcription	HSMM	muscle
16	chr10:89871000-89875400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:89871000-89875400	Weak transcription	Hela-S3	cervix
18	chr10:89871000-89875400	Weak transcription	HMEC	breast
19	chr10:89871000-89875400	Weak transcription	HSMMtube	muscle
20	chr10:89871000-89875400	Weak transcription	NHLF	lung
21	chr10:89871800-89875000	Enhancers	Dnd41	blood
22	chr10:89872200-89878800	Enhancers	Fetal Thymus	thymus
23	chr10:89872400-89874600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:89872400-89881200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr10:89872600-89873800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:89872600-89874400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:89872600-89877800	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:89872600-89878200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr10:89872600-89878200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:89872800-89873800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:89872800-89874000	Enhancers	Adipose Nuclei	Adipose
32	chr10:89872800-89874200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr10:89872800-89874600	Flanking Active TSS	GM12878-XiMat	blood
34	chr10:89872800-89874600	Enhancers	NHDF-Ad	bronchial
35	chr10:89872800-89875000	Enhancers	Thymus	Thymus
36	chr10:89872800-89877400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:89872800-89878800	Enhancers	Primary T cells from cord blood	blood
38	chr10:89873200-89873800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr10:89873200-89874000	Enhancers	Left Ventricle	heart
40	chr10:89873200-89874000	Enhancers	Right Atrium	heart
41	chr10:89873200-89874000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:89873200-89874200	Enhancers	Fetal Stomach	stomach
43	chr10:89873200-89874200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:89873200-89874400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr10:89873200-89874600	Enhancers	Primary T cells fromperipheralblood	blood
46	chr10:89873200-89874600	Enhancers	Lung	lung
47	chr10:89873200-89874600	Enhancers	Spleen	Spleen
48	chr10:89873200-89875600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:89873200-89876200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:89873200-89878200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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