Variant report

Variant	rs55722339
Chromosome Location	chr10:89872495-89872496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89871797..89873959-chr10:89875999..89877551,2	K562	blood:
2	chr10:89620655..89622338-chr10:89871655..89874037,2	K562	blood:
3	chr10:89620141..89628673-chr10:89867993..89880509,31	MCF-7	breast:
4	chr10:89621497..89624359-chr10:89871127..89872800,3	MCF-7	breast:
5	chr10:89872459..89874892-chr10:89876051..89878099,2	K562	blood:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11593673	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573738	0.82[EUR][1000 genomes]
rs17322521	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322612	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17419930	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225796	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55727359	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56221718	0.84[AMR][1000 genomes]
rs56375327	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079675	0.82[EUR][1000 genomes]
rs72816194	0.84[EUR][1000 genomes]
rs7899035	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905605	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
2	chr10:89867800-89873200	Weak transcription	Spleen	Spleen
3	chr10:89867800-89873800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:89868000-89872800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:89868000-89873800	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:89868200-89873600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:89868200-89876200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:89868400-89872800	Weak transcription	Primary T cells from cord blood	blood
9	chr10:89868400-89872800	Weak transcription	Thymus	Thymus
10	chr10:89868400-89873200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:89868400-89873200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:89868400-89873200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:89868400-89873200	Weak transcription	Left Ventricle	heart
14	chr10:89868400-89873600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:89868400-89873600	Weak transcription	Psoas Muscle	Psoas
16	chr10:89868400-89874000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:89868400-89876800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:89868600-89872600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:89868600-89872800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:89868800-89872600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:89869000-89872600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:89869200-89873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:89869600-89881400	Enhancers	Primary B cells from peripheral blood	blood
24	chr10:89870000-89873400	Enhancers	Primary B cells from cord blood	blood
25	chr10:89870800-89872600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:89870800-89872600	Weak transcription	Osteobl	bone
27	chr10:89870800-89872800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:89870800-89872800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:89870800-89873200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:89870800-89873200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:89870800-89874000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:89870800-89875200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:89870800-89875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:89870800-89875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:89870800-89875400	Weak transcription	NH-A	brain
36	chr10:89870800-89875400	Weak transcription	NHEK	skin
37	chr10:89870800-89875600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:89871000-89872600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:89871000-89873200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:89871000-89874800	Weak transcription	HSMM	muscle
41	chr10:89871000-89875400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:89871000-89875400	Weak transcription	Hela-S3	cervix
43	chr10:89871000-89875400	Weak transcription	HMEC	breast
44	chr10:89871000-89875400	Weak transcription	HSMMtube	muscle
45	chr10:89871000-89875400	Weak transcription	NHLF	lung
46	chr10:89871400-89872800	Weak transcription	NHDF-Ad	bronchial
47	chr10:89871800-89875000	Enhancers	Dnd41	blood
48	chr10:89872200-89872800	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr10:89872200-89878800	Enhancers	Fetal Thymus	thymus
50	chr10:89872400-89872800	Enhancers	GM12878-XiMat	blood

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