Variant report

Variant	rs72816194
Chromosome Location	chr10:89879716-89879717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89798093..89799597-chr10:89878429..89879964,2	MCF-7	breast:
2	chr10:89874980..89876628-chr10:89878193..89879862,2	K562	blood:
3	chr10:89874131..89877304-chr10:89878864..89883197,3	MCF-7	breast:
4	chr10:89620141..89628673-chr10:89867993..89880509,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11593673	0.86[EUR][1000 genomes]
rs12573738	0.82[EUR][1000 genomes]
rs17322521	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17322612	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17419930	0.86[EUR][1000 genomes]
rs2225796	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55722339	0.84[EUR][1000 genomes]
rs55727359	0.86[EUR][1000 genomes]
rs56375327	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7079675	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7899035	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7905605	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89869600-89881400	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:89872400-89881200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:89874000-89880200	Weak transcription	Right Atrium	heart
4	chr10:89874000-89881200	Enhancers	Primary B cells from cord blood	blood
5	chr10:89874000-89891400	Weak transcription	Left Ventricle	heart
6	chr10:89874600-89879800	Weak transcription	Lung	lung
7	chr10:89874600-89880800	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:89874600-89882400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:89876000-89880600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:89877200-89881400	Weak transcription	NHLF	lung
11	chr10:89877400-89880000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:89877400-89880400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:89878200-89879800	Weak transcription	Dnd41	blood
14	chr10:89878200-89880000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:89878200-89880000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:89878200-89880200	Weak transcription	Thymus	Thymus
17	chr10:89878400-89880000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr10:89878400-89880000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:89878400-89880000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:89878800-89879800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:89878800-89879800	Weak transcription	Spleen	Spleen
22	chr10:89878800-89880000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr10:89878800-89880000	Weak transcription	Primary T cells from cord blood	blood
24	chr10:89878800-89880000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:89878800-89880000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:89878800-89880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:89878800-89880000	Weak transcription	Fetal Thymus	thymus
28	chr10:89878800-89880000	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr10:89878800-89892200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:89879000-89880000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:89879000-89880000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:89879000-89880400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:89879200-89880400	Weak transcription	Stomach Mucosa	stomach
34	chr10:89879200-89896600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:89879400-89881000	Enhancers	GM12878-XiMat	blood
36	chr10:89879600-89881000	Enhancers	Primary T helper cells PMA-I stimulated	--

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