Variant report

Variant	rs17421433
Chromosome Location	chr10:6124793-6124794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6124483..6126378-chr10:6128516..6131168,2	MCF-7	breast:
2	chr10:6117334..6119489-chr10:6124057..6125873,2	K562	blood:
3	chr10:6124462..6126940-chr10:6130262..6132996,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12722491	0.84[EUR][1000 genomes]
rs12722492	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12722494	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12722498	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12722503	0.86[AMR][1000 genomes]
rs12722528	0.85[AMR][1000 genomes]
rs1924137	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2274037	0.80[AMR][1000 genomes]
rs41294927	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41294935	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41295051	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62626316	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62626324	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72776071	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6115600-6127800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:6121600-6125600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr10:6123800-6126600	Enhancers	Fetal Thymus	thymus
4	chr10:6124000-6125600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:6124200-6125000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:6124400-6124800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:6124400-6124800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:6124400-6125000	Enhancers	Right Ventricle	heart
9	chr10:6124400-6126200	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr10:6124400-6126400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:6124600-6124800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:6124600-6124800	Enhancers	Left Ventricle	heart
13	chr10:6124600-6124800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr10:6124600-6124800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr10:6124600-6124800	Bivalent Enhancer	HUVEC	blood vessel
16	chr10:6124600-6124800	Bivalent Enhancer	K562	blood
17	chr10:6124600-6125000	Enhancers	Adipose Nuclei	Adipose
18	chr10:6124600-6125600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:6124600-6125600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:6124600-6126000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
21	chr10:6124600-6126200	Enhancers	Primary T cells from cord blood	blood
22	chr10:6124600-6126200	Enhancers	Right Atrium	heart
23	chr10:6124600-6126200	Enhancers	Thymus	Thymus
24	chr10:6124600-6126400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr10:6124600-6126800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr10:6124600-6128200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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