Variant report

Variant	rs41294927
Chromosome Location	chr10:6102259-6102260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6082910..6085859-chr10:6100241..6103147,2	K562	blood:
2	chr10:6101613..6103309-chr10:6128330..6130665,2	MCF-7	breast:
3	chr10:6101877..6103598-chr10:6244884..6246543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12722491	0.80[EUR][1000 genomes]
rs12722492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722494	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722498	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722503	0.93[AMR][1000 genomes]
rs12722528	0.93[AMR][1000 genomes]
rs12722608	0.81[AMR][1000 genomes]
rs17421433	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1924137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228149	0.82[AMR][1000 genomes]
rs2274037	0.84[AMR][1000 genomes]
rs41294647	0.81[AMR][1000 genomes]
rs41294685	0.82[AMR][1000 genomes]
rs41294935	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41295051	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62626316	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62626324	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72776071	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6093400-6102800	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:6093800-6104200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
3	chr10:6096200-6107400	Weak transcription	Placenta	Placenta
4	chr10:6096400-6102800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:6096400-6103800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:6096600-6103600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:6098000-6104400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:6099000-6103800	Weak transcription	Spleen	Spleen
9	chr10:6099000-6104000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:6099200-6103600	Weak transcription	Primary B cells from cord blood	blood
11	chr10:6099600-6103600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr10:6099800-6104000	Weak transcription	Lung	lung
13	chr10:6100000-6102800	Weak transcription	Adipose Nuclei	Adipose
14	chr10:6100000-6103800	Weak transcription	Left Ventricle	heart
15	chr10:6100200-6102800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:6100800-6102400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:6101000-6102800	Weak transcription	Primary T cells from cord blood	blood
18	chr10:6101200-6103000	Enhancers	GM12878-XiMat	blood
19	chr10:6101600-6103800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:6101800-6103400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
21	chr10:6101800-6104800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:6102000-6102400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:6102000-6102600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:6102000-6104800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr10:6102000-6105200	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:6102200-6102400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr10:6102200-6103400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:6102200-6103600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:6102200-6104200	Active TSS	Colonic Mucosa	Colon
30	chr10:6102200-6104600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr10:6102200-6104600	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr10:6102200-6105000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:6102200-6107400	Weak transcription	Right Atrium	heart
34	chr10:6102200-6107400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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