Variant report

Variant	rs12722528
Chromosome Location	chr10:6076784-6076785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6076656..6079069-chr10:6086121..6089076,2	MCF-7	breast:
2	chr10:6074070..6077031-chr10:6131328..6132999,2	K562	blood:
3	chr10:6076770..6078831-chr10:6080611..6082982,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12722492	0.93[AMR][1000 genomes]
rs12722494	0.94[AMR][1000 genomes]
rs12722498	0.91[AMR][1000 genomes]
rs12722503	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722608	0.84[AMR][1000 genomes]
rs17421433	0.85[AMR][1000 genomes]
rs1924137	0.93[AMR][1000 genomes]
rs2228149	0.89[AMR][1000 genomes]
rs2274037	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs41294647	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41294685	0.89[AMR][1000 genomes]
rs41294927	0.93[AMR][1000 genomes]
rs41294935	0.89[AMR][1000 genomes]
rs41295051	0.89[AMR][1000 genomes]
rs62626316	0.89[AMR][1000 genomes]
rs62626324	0.87[AMR][1000 genomes]
rs72776071	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv894813	chr10:6071453-6076784	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:6066800-6078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:6070200-6077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:6070400-6077000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:6070400-6077600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:6073000-6077800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:6075000-6078600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:6075400-6079200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:6075600-6076800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:6075600-6076800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:6075600-6076800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:6075600-6076800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:6075600-6077200	Enhancers	Adipose Nuclei	Adipose
14	chr10:6075800-6076800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:6075800-6076800	Enhancers	K562	blood
16	chr10:6075800-6076800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:6075800-6077200	Enhancers	Colon Smooth Muscle	Colon
18	chr10:6075800-6078800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:6075800-6079000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:6076000-6079000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr10:6076000-6079600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:6076200-6076800	Enhancers	Primary hematopoietic stem cells	blood
23	chr10:6076400-6076800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:6076400-6077000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:6076600-6079200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--

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