Variant report

Variant rs17438687
Chromosome Location chr2:86479287-86479288
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86460800-86479400 Weak transcription Brain Anterior Caudate brain
2 chr2:86463000-86482000 Weak transcription Psoas Muscle Psoas
3 chr2:86468400-86481600 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr2:86468800-86482400 Weak transcription Gastric stomach
5 chr2:86470800-86482000 Weak transcription Aorta Aorta
6 chr2:86471800-86482000 Weak transcription Right Atrium heart
7 chr2:86472000-86497200 Weak transcription Fetal Intestine Large intestine
8 chr2:86472200-86482000 Weak transcription Pancreas Pancrea
9 chr2:86472400-86479400 Weak transcription Stomach Mucosa stomach
10 chr2:86472400-86484800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr2:86476000-86479800 Enhancers Rectal Smooth Muscle rectum
12 chr2:86476400-86479600 Enhancers Duodenum Smooth Muscle Duodenum
13 chr2:86476800-86481800 Weak transcription H9 Cell Line embryonic stem cell
14 chr2:86477000-86480800 Strong transcription Fetal Intestine Small intestine
15 chr2:86477400-86481600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr2:86477400-86481800 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr2:86477400-86481800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr2:86477600-86479600 Enhancers Colon Smooth Muscle Colon
19 chr2:86477600-86481800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr2:86477600-86481800 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr2:86477600-86482000 Weak transcription Duodenum Mucosa Duodenum
22 chr2:86477800-86479400 Genic enhancers Fetal Muscle Leg muscle
23 chr2:86477800-86479800 Enhancers Brain Inferior Temporal Lobe brain
24 chr2:86477800-86493200 Weak transcription Fetal Muscle Trunk muscle
25 chr2:86478000-86479600 Enhancers Fetal Adrenal Gland Adrenal Gland
26 chr2:86478200-86479400 Strong transcription Brain Germinal Matrix brain
27 chr2:86478200-86480800 Strong transcription HSMMtube muscle
28 chr2:86478200-86481800 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr2:86478200-86482400 Weak transcription Fetal Brain Male brain
30 chr2:86478200-86483200 Enhancers Fetal Heart heart
31 chr2:86478200-86498600 Weak transcription Brain Angular Gyrus brain
32 chr2:86478400-86479400 Genic enhancers Fetal Brain Female brain
33 chr2:86478400-86491400 Weak transcription Brain Cingulate Gyrus brain
34 chr2:86478600-86480000 Enhancers Stomach Smooth Muscle stomach
35 chr2:86478800-86479400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr2:86479000-86479400 Enhancers Primary T helper naive cells fromperipheralblood blood
37 chr2:86479000-86479400 Bivalent Enhancer HUVEC blood vessel
38 chr2:86479000-86479600 Enhancers Fetal Stomach stomach
39 chr2:86479000-86479600 Enhancers Skeletal Muscle Female skeletal muscle
40 chr2:86479000-86479800 Enhancers Right Ventricle heart
41 chr2:86479000-86480800 Enhancers Left Ventricle heart
42 chr2:86479200-86479400 Enhancers Esophagus oesophagus
43 chr2:86479200-86479400 Enhancers Thymus Thymus
44 chr2:86479200-86479600 Enhancers Brain Substantia Nigra brain
45 chr2:86479200-86479600 Flanking Active TSS HepG2 liver
46 chr2:86479200-86482000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
47 chr2:86479200-86482000 Weak transcription Lung lung

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