Variant report

Variant	rs17439192
Chromosome Location	chr4:96338581-96338582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10440376	1.00[CHB][hapmap]
rs1351770	1.00[CHB][hapmap]
rs1384862	1.00[CHB][hapmap]
rs1483750	1.00[YRI][hapmap]
rs17373352	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17380297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17439744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57463740	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6821215	0.94[ASN][1000 genomes]
rs6821365	0.94[ASN][1000 genomes]
rs6826809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6827106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6856205	1.00[CHB][hapmap]
rs9998018	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96331200-96345800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96332400-96341000	Enhancers	Brain Hippocampus Middle	brain
3	chr4:96333600-96339400	Weak transcription	Right Atrium	heart
4	chr4:96333600-96348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:96334600-96353000	Weak transcription	Fetal Kidney	kidney
6	chr4:96336000-96338800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96336800-96339200	Enhancers	Brain Angular Gyrus	brain
8	chr4:96337000-96339000	Enhancers	Brain Anterior Caudate	brain
9	chr4:96337400-96338600	Weak transcription	Brain Substantia Nigra	brain
10	chr4:96338200-96338600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:96338200-96338600	Weak transcription	Fetal Lung	lung
12	chr4:96338200-96339200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:96338400-96340600	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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