Variant report

Variant	rs17439744
Chromosome Location	chr4:96344455-96344456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17373352	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17380297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17439192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57463740	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6821215	0.94[ASN][1000 genomes]
rs6821365	0.94[ASN][1000 genomes]
rs6826809	0.94[ASN][1000 genomes]
rs6827106	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96331200-96345800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96333600-96348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:96334600-96353000	Weak transcription	Fetal Kidney	kidney
4	chr4:96339200-96347400	Weak transcription	Brain Angular Gyrus	brain
5	chr4:96339400-96347600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:96341600-96349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:96342200-96349600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:96342800-96344600	Enhancers	Brain Substantia Nigra	brain
9	chr4:96343000-96344800	Enhancers	Brain Hippocampus Middle	brain
10	chr4:96343400-96347200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:96343400-96347600	Weak transcription	Brain Anterior Caudate	brain
12	chr4:96343600-96347400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:96343800-96347400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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