Variant report

Variant	rs6826809
Chromosome Location	chr4:96318327-96318328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10440376	1.00[CHB][hapmap]
rs1351770	1.00[CHB][hapmap]
rs1384862	1.00[CHB][hapmap]
rs17373352	0.88[ASN][1000 genomes]
rs17380297	0.94[ASN][1000 genomes]
rs17439192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17439744	0.94[ASN][1000 genomes]
rs57463740	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856205	1.00[CHB][hapmap]
rs9998018	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
2	chr4:96304200-96323000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:96304200-96333000	Weak transcription	Fetal Lung	lung
4	chr4:96314600-96331800	Weak transcription	Fetal Stomach	stomach
5	chr4:96315400-96318400	Enhancers	Brain Hippocampus Middle	brain
6	chr4:96316200-96332000	Weak transcription	Fetal Kidney	kidney
7	chr4:96317400-96323400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:96317400-96333000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:96318000-96319000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:96318000-96319400	Weak transcription	Brain Substantia Nigra	brain
11	chr4:96318200-96319200	Weak transcription	Brain Angular Gyrus	brain
12	chr4:96318200-96319400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:96318200-96321200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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