Variant report

Variant	rs1744653
Chromosome Location	chr6:36397688-36397689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36391946..36393446-chr6:36395564..36398109,2	MCF-7	breast:
2	chr6:36386375..36388666-chr6:36396163..36398250,2	K562	blood:
3	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
4	chr6:36393812..36400727-chr6:36401208..36405433,7	K562	blood:
5	chr6:36389876..36393968-chr6:36394401..36398329,5	MCF-7	breast:
6	chr6:36390037..36391654-chr6:36397187..36400029,2	K562	blood:
7	chr6:36395657..36401114-chr6:36407932..36413764,7	MCF-7	breast:
8	chr6:36388539..36397962-chr6:36560062..36566089,23	K562	blood:
9	chr6:36397591..36399508-chr6:36561399..36563224,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12525802	0.81[ASN][1000 genomes]
rs16888605	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs16888788	0.84[CHB][hapmap]
rs2104219	0.80[CHB][hapmap]
rs2267930	0.84[CHB][hapmap]
rs2273882	0.84[CHB][hapmap]
rs3778028	0.92[CHB][hapmap]
rs41272166	0.81[ASN][1000 genomes]
rs4236051	0.84[CHB][hapmap]
rs4713975	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4713978	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs6922008	0.82[AFR][1000 genomes]
rs7741260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741729	0.92[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36392000-36398800	Weak transcription	Osteobl	bone
2	chr6:36392000-36399200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:36392000-36400000	Weak transcription	Fetal Heart	heart
4	chr6:36392000-36404200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:36393800-36399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:36394200-36399600	Weak transcription	NHEK	skin
7	chr6:36394200-36399800	Weak transcription	HMEC	breast
8	chr6:36395800-36398000	Weak transcription	HepG2	liver
9	chr6:36396000-36397800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:36396000-36398200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36396000-36398200	Weak transcription	HSMMtube	muscle
12	chr6:36396000-36399400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:36396000-36399400	Weak transcription	HSMM	muscle
14	chr6:36396000-36399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:36396000-36399800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:36396000-36400000	Weak transcription	A549	lung
17	chr6:36396200-36397800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:36396400-36398000	Weak transcription	K562	blood
19	chr6:36397000-36397800	Weak transcription	Placenta	Placenta
20	chr6:36397200-36399000	Weak transcription	Hela-S3	cervix
21	chr6:36397600-36398200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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