Variant report

Variant	rs7741260
Chromosome Location	chr6:36399120-36399121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
2	chr6:36393812..36400727-chr6:36401208..36405433,7	K562	blood:
3	chr6:36390037..36391654-chr6:36397187..36400029,2	K562	blood:
4	chr6:36395657..36401114-chr6:36407932..36413764,7	MCF-7	breast:
5	chr6:36397591..36399508-chr6:36561399..36563224,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179165	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12525802	0.81[ASN][1000 genomes]
rs16888605	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs16888788	0.84[CHB][hapmap]
rs1744653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104219	0.80[CHB][hapmap]
rs2267930	0.84[CHB][hapmap]
rs2273882	0.84[CHB][hapmap]
rs3778028	0.92[CHB][hapmap]
rs41272166	0.81[ASN][1000 genomes]
rs4236051	0.84[CHB][hapmap]
rs4713975	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4713978	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs6922008	0.84[AFR][1000 genomes]
rs7741729	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs7747099	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36392000-36399200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:36392000-36400000	Weak transcription	Fetal Heart	heart
3	chr6:36392000-36404200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:36393800-36399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:36394200-36399600	Weak transcription	NHEK	skin
6	chr6:36394200-36399800	Weak transcription	HMEC	breast
7	chr6:36396000-36399400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:36396000-36399400	Weak transcription	HSMM	muscle
9	chr6:36396000-36399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:36396000-36399800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:36396000-36400000	Weak transcription	A549	lung
12	chr6:36397800-36399200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:36397800-36400400	Enhancers	Placenta	Placenta
14	chr6:36398000-36399600	Enhancers	HepG2	liver
15	chr6:36398200-36400200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:36398400-36400600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:36398600-36399800	Weak transcription	HSMMtube	muscle
18	chr6:36398600-36400400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:36398800-36400800	Enhancers	Osteobl	bone
20	chr6:36399000-36399200	Weak transcription	NH-A	brain
21	chr6:36399000-36399800	Enhancers	GM12878-XiMat	blood
22	chr6:36399000-36400000	Enhancers	Hela-S3	cervix
23	chr6:36399000-36400600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:36399000-36410200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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