Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36391946..36393446-chr6:36395564..36398109,2	MCF-7	breast:
2	chr6:36388375..36397373-chr6:36559893..36568556,25	K562	blood:
3	chr6:36389566..36392929-chr6:36393759..36397072,6	K562	blood:
4	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
5	chr6:36393812..36400727-chr6:36401208..36405433,7	K562	blood:
6	chr6:36389876..36393968-chr6:36394401..36398329,5	MCF-7	breast:
7	chr6:36395657..36401114-chr6:36407932..36413764,7	MCF-7	breast:
8	chr6:36388539..36397962-chr6:36560062..36566089,23	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12525802	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16888605	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16888788	0.84[CHB][hapmap]
rs16888791	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs1744653	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2104219	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs2267930	0.84[CHB][hapmap]
rs2273882	0.84[CHB][hapmap]
rs2395653	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs3778028	0.92[CHB][hapmap]
rs41272166	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4236051	0.84[CHB][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap]
rs4711451	0.82[ASN][1000 genomes]
rs4713976	0.82[ASN][1000 genomes]
rs4713977	0.82[ASN][1000 genomes]
rs4713978	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457930	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7741260	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7741729	0.92[CHD][hapmap]
rs7762777	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7762785	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9800473	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36391800-36397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:36392000-36398800	Weak transcription	Osteobl	bone
3	chr6:36392000-36399200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:36392000-36400000	Weak transcription	Fetal Heart	heart
5	chr6:36392000-36404200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:36392400-36396800	Weak transcription	Placenta	Placenta
7	chr6:36393800-36399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:36394200-36399600	Weak transcription	NHEK	skin
9	chr6:36394200-36399800	Weak transcription	HMEC	breast
10	chr6:36395200-36396000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36395400-36396000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:36395400-36396000	Enhancers	HSMM	muscle
13	chr6:36395600-36395800	Enhancers	HepG2	liver
14	chr6:36395600-36396000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:36395600-36396000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:36395600-36396000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:36395600-36396000	Enhancers	A549	lung
18	chr6:36395600-36396000	Flanking Active TSS	Hela-S3	cervix
19	chr6:36395600-36396000	Enhancers	HSMMtube	muscle
20	chr6:36395600-36396400	Flanking Active TSS	K562	blood

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