Variant report

Variant	rs6457930
Chromosome Location	chr6:36520960-36520961
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36520632..36523393-chr6:36561390..36564833,4	MCF-7	breast:
2	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
3	chr6:36511906..36515395-chr6:36518321..36521215,4	MCF-7	breast:
4	chr6:36518833..36522681-chr6:36560352..36565816,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112079	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12525802	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16888605	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs16888788	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs16888791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744659	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1794628	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2104219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267930	0.82[CHB][hapmap]
rs2273882	0.82[CHB][hapmap]
rs2395653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272166	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4236051	0.82[CHB][hapmap]
rs4713975	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4713978	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57145488	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57219009	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57634930	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681253	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6905301	0.86[EUR][1000 genomes]
rs73417359	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7741729	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7762777	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7762779	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762785	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs853875	0.93[ASN][1000 genomes]
rs853878	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9800473	0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36515800-36522400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:36516200-36524000	Weak transcription	A549	lung
3	chr6:36518600-36522600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:36520400-36522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:36520600-36522400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links