Variant report

Variant	rs6905301
Chromosome Location	chr6:36518937-36518938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16888791	0.83[EUR][1000 genomes]
rs2104219	0.86[EUR][1000 genomes]
rs2395653	0.84[EUR][1000 genomes]
rs45524837	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713983	0.84[EUR][1000 genomes]
rs57145488	0.84[EUR][1000 genomes]
rs57219009	0.84[EUR][1000 genomes]
rs57634930	0.83[EUR][1000 genomes]
rs6457930	0.86[EUR][1000 genomes]
rs7762779	0.84[EUR][1000 genomes]
rs7762785	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36515800-36520000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:36515800-36522400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:36516000-36519000	Enhancers	Primary B cells from cord blood	blood
4	chr6:36516200-36524000	Weak transcription	A549	lung
5	chr6:36517800-36519200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:36518400-36519000	Enhancers	GM12878-XiMat	blood
7	chr6:36518600-36522600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:36518800-36519000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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