Variant report

Variant	rs4713983
Chromosome Location	chr6:36518049-36518050
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36511832..36520020-chr6:36560637..36566762,23	K562	blood:
2	chr6:36511392..36518322-chr6:36560440..36567216,21	MCF-7	breast:
3	chr6:36514408..36517140-chr6:36517827..36520296,3	K562	blood:
4	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
5	chr6:36507858..36510306-chr6:36517848..36519533,3	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000112079	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12525802	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16888788	0.81[ASN][1000 genomes]
rs16888791	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744659	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1794628	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2104219	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272166	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713978	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57145488	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57219009	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57634930	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457930	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681253	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6905301	0.84[EUR][1000 genomes]
rs73417359	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7741729	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7762779	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762785	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs853875	0.93[ASN][1000 genomes]
rs853878	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9800473	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36515800-36520000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:36515800-36522400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:36516000-36519000	Enhancers	Primary B cells from cord blood	blood
4	chr6:36516200-36518400	Weak transcription	GM12878-XiMat	blood
5	chr6:36516200-36524000	Weak transcription	A549	lung
6	chr6:36516400-36518400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:36516800-36518800	Weak transcription	K562	blood
8	chr6:36517800-36518200	Enhancers	HepG2	liver
9	chr6:36517800-36519200	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links