Variant report

Variant	rs1744659
Chromosome Location	chr6:36516367-36516368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:36515794-36516514	K562	blood:	n/a	n/a
2	BHLHE40	chr6:36515942-36516492	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36511832..36520020-chr6:36560637..36566762,23	K562	blood:
2	chr6:36511392..36518322-chr6:36560440..36567216,21	MCF-7	breast:
3	chr6:36511879..36517279-chr6:36558264..36566013,19	MCF-7	breast:
4	chr6:36409184..36410963-chr6:36513836..36516900,3	K562	blood:
5	chr1:1822559..1824176-chr6:36515311..36516812,2	K562	blood:
6	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:

No data

Variant related genes	Relation type
STK38	TF binding region
ENSG00000179165	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000231050	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16888791	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1744660	0.87[EUR][1000 genomes]
rs1794627	0.87[EUR][1000 genomes]
rs1794628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104219	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2395653	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4713983	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57145488	0.80[ASN][1000 genomes]
rs57219009	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57634930	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6457930	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs681253	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73417359	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7741729	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762779	0.81[ASN][1000 genomes]
rs853875	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853878	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36515200-36517000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:36515400-36516400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr6:36515400-36516400	Enhancers	Fetal Intestine Small	intestine
4	chr6:36515400-36516400	Enhancers	Small Intestine	intestine
5	chr6:36515400-36516400	Flanking Bivalent TSS/Enh	HepG2	liver
6	chr6:36515400-36516600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr6:36515600-36516400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:36515600-36516400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:36515600-36516400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:36515600-36516400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr6:36515600-36516400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:36515600-36516400	Enhancers	Colonic Mucosa	Colon
13	chr6:36515600-36516400	Enhancers	Fetal Intestine Large	intestine
14	chr6:36515600-36516400	Enhancers	NH-A	brain
15	chr6:36515600-36516600	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:36515600-36516600	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:36515600-36516600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:36515600-36516600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:36515600-36516600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:36515600-36516600	Enhancers	Fetal Thymus	thymus
21	chr6:36515800-36516400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:36515800-36516800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:36515800-36520000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:36515800-36522400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:36516000-36516600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:36516000-36516600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:36516000-36516800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr6:36516000-36519000	Enhancers	Primary B cells from cord blood	blood
29	chr6:36516200-36516400	Enhancers	Primary T cells from cord blood	blood
30	chr6:36516200-36516600	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:36516200-36516600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:36516200-36516600	Enhancers	Hela-S3	cervix
33	chr6:36516200-36516800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:36516200-36516800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr6:36516200-36516800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:36516200-36516800	Enhancers	K562	blood
37	chr6:36516200-36517000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr6:36516200-36517200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:36516200-36518400	Weak transcription	GM12878-XiMat	blood
40	chr6:36516200-36524000	Weak transcription	A549	lung

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