Variant report

Variant	rs7762785
Chromosome Location	chr6:36524500-36524501
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36523233..36527454-chr6:36560402..36564632,7	MCF-7	breast:
2	chr6:36524472..36526029-chr6:36572608..36574439,2	MCF-7	breast:
3	chr6:36522642..36525654-chr6:36546165..36549998,4	MCF-7	breast:
4	chr6:36523665..36533327-chr6:36560183..36564350,15	K562	blood:
5	chr6:36524459..36530212-chr6:36535986..36541139,5	MCF-7	breast:
6	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
7	chr6:36521727..36524987-chr6:36525376..36528528,3	K562	blood:
8	chr6:36513276..36517256-chr6:36524095..36526073,4	K562	blood:
9	chr6:36512337..36518540-chr6:36522888..36526719,9	MCF-7	breast:
10	chr6:36524196..36527132-chr6:36635202..36638000,2	MCF-7	breast:
11	chr6:36522635..36525085-chr6:36558432..36560977,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000112079	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12525802	0.83[EUR][1000 genomes]
rs16888605	0.86[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs16888791	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2104219	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2395653	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41272166	0.83[EUR][1000 genomes]
rs4713975	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4713978	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs4713983	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57145488	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57219009	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57634930	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6457930	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs681253	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6905301	0.84[EUR][1000 genomes]
rs73417359	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7741729	0.87[CHB][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7762777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7762779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853875	0.81[ASN][1000 genomes]
rs853878	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9800473	0.94[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36522800-36526600	Weak transcription	Adipose Nuclei	Adipose
2	chr6:36523000-36527000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:36523400-36525000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:36523400-36528400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:36523600-36525200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:36523800-36525400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:36524000-36529600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:36524200-36524600	Weak transcription	A549	lung
9	chr6:36524200-36524600	Bivalent Enhancer	HepG2	liver
10	chr6:36524200-36525000	Weak transcription	HSMMtube	muscle
11	chr6:36524200-36525600	Weak transcription	Hela-S3	cervix

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