Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:27406760..27408471-chr7:27412393..27414390,2	MCF-7	breast:
2	chr7:27396809..27399657-chr7:27404477..27407398,2	MCF-7	breast:
3	chr7:27405757..27408432-chr7:27408918..27411728,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10486496	1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes]
rs11563322	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11563573	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11563575	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11563576	1.00[AMR][1000 genomes]
rs12534334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs12540654	0.87[ASN][1000 genomes]
rs17449951	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes]
rs17449958	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes]
rs17449979	1.00[AMR][1000 genomes]
rs17450021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17450035	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17450049	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17450104	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17478714	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17478742	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17478763	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6973628	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6978713	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7794937	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv3340965	chr7:27406477-27408975	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27398200-27407400	Weak transcription	Pancreas	Pancrea
2	chr7:27404200-27411800	Weak transcription	K562	blood
3	chr7:27404800-27407400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:27404800-27415000	Weak transcription	Right Atrium	heart
5	chr7:27405000-27407400	Weak transcription	Spleen	Spleen
6	chr7:27405000-27407600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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