Variant report

Variant	rs11563573
Chromosome Location	chr7:27412444-27412445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27406760..27408471-chr7:27412393..27414390,2	MCF-7	breast:
2	chr7:27400989..27404495-chr7:27408485..27412561,4	K562	blood:
3	chr7:27411422..27413015-chr7:27419474..27421676,2	MCF-7	breast:
4	chr7:27396768..27399494-chr7:27410784..27413777,2	MCF-7	breast:
5	chr7:27411520..27413922-chr7:27416593..27418466,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224322	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10486496	0.85[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11563322	1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11563575	1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11563576	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333740	1.00[EUR][1000 genomes]
rs12534334	1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12540654	0.98[ASN][1000 genomes]
rs17155208	1.00[EUR][1000 genomes]
rs17449226	1.00[EUR][1000 genomes]
rs17449448	1.00[EUR][1000 genomes]
rs17449951	0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17449958	0.86[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17449979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17450021	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17450035	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17450049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17450069	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17450104	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17471730	1.00[EUR][1000 genomes]
rs17478714	0.84[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17478742	1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17478763	0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17478896	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17502782	1.00[EUR][1000 genomes]
rs6973628	0.98[ASN][1000 genomes]
rs6978713	0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7794937	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27404800-27415000	Weak transcription	Right Atrium	heart
2	chr7:27411400-27412600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr7:27411600-27412800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:27411600-27413000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:27411800-27412600	Enhancers	NHDF-Ad	bronchial
6	chr7:27411800-27412600	Enhancers	Osteobl	bone
7	chr7:27411800-27412800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:27411800-27412800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:27411800-27412800	Enhancers	K562	blood
10	chr7:27411800-27413000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:27412000-27412600	Enhancers	Primary hematopoietic stem cells	blood
12	chr7:27412000-27412600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:27412000-27412600	Enhancers	HUVEC	blood vessel
14	chr7:27412200-27412600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:27412200-27412600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:27412200-27412600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:27412200-27412800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:27412200-27415000	Weak transcription	A549	lung
19	chr7:27412400-27412600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:27412400-27412600	Enhancers	Pancreas	Pancrea
21	chr7:27412400-27412600	Enhancers	Hela-S3	cervix
22	chr7:27412400-27414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:27412400-27414600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:27412400-27415600	Weak transcription	H1 Cell Line	embryonic stem cell

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