Variant report
| Variant | rs17478896 |
|---|---|
| Chromosome Location | chr7:27427307-27427308 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10486496 | 0.85[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs11563322 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs11563573 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11563575 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs11563576 | 1.00[EUR][1000 genomes] |
| rs12333740 | 1.00[EUR][1000 genomes] |
| rs12534334 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs12540654 | 0.85[ASN][1000 genomes] |
| rs12666726 | 1.00[YRI][hapmap] |
| rs17155208 | 1.00[EUR][1000 genomes] |
| rs17429641 | 1.00[YRI][hapmap] |
| rs17439235 | 1.00[YRI][hapmap] |
| rs17449226 | 1.00[EUR][1000 genomes] |
| rs17449448 | 1.00[EUR][1000 genomes] |
| rs17449951 | 0.86[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs17449958 | 0.86[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs17449979 | 1.00[EUR][1000 genomes] |
| rs17450021 | 1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17450035 | 1.00[EUR][1000 genomes] |
| rs17450049 | 1.00[EUR][1000 genomes] |
| rs17450104 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17471730 | 1.00[EUR][1000 genomes] |
| rs17478714 | 0.84[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs17478742 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs17478763 | 1.00[EUR][1000 genomes] |
| rs17502782 | 1.00[EUR][1000 genomes] |
| rs6973628 | 0.85[ASN][1000 genomes] |
| rs6978713 | 0.86[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
| 2 | nsv830930 | chr7:27395838-27587355 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27427200-27429000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
