Variant report

Variant	rs17502782
Chromosome Location	chr7:27364877-27364878
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27362143..27365035-chr7:27372640..27375053,2	MCF-7	breast:
2	7:27238414-27242313..7:27354053-27367655	Hela-S3	cervix:
3	chr7:27354696..27356208-chr7:27362416..27365005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243766	Chromatin interaction
ENSG00000106031	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10486496	1.00[EUR][1000 genomes]
rs11563322	1.00[EUR][1000 genomes]
rs11563573	1.00[EUR][1000 genomes]
rs11563575	1.00[EUR][1000 genomes]
rs11563576	1.00[EUR][1000 genomes]
rs11974568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333740	1.00[EUR][1000 genomes]
rs12534334	1.00[EUR][1000 genomes]
rs17155208	1.00[EUR][1000 genomes]
rs17449226	1.00[EUR][1000 genomes]
rs17449448	1.00[EUR][1000 genomes]
rs17449951	1.00[EUR][1000 genomes]
rs17449958	1.00[EUR][1000 genomes]
rs17449979	1.00[EUR][1000 genomes]
rs17450021	1.00[EUR][1000 genomes]
rs17450035	1.00[EUR][1000 genomes]
rs17450049	1.00[EUR][1000 genomes]
rs17450104	1.00[EUR][1000 genomes]
rs17471730	1.00[EUR][1000 genomes]
rs17473985	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17478714	1.00[EUR][1000 genomes]
rs17478742	1.00[EUR][1000 genomes]
rs17478763	1.00[EUR][1000 genomes]
rs17478896	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
4	nsv887893	chr7:27326739-27380936	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1026851	chr7:27344799-27370551	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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