Variant report

Variant	rs17450104
Chromosome Location	chr7:27414187-27414188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27406760..27408471-chr7:27412393..27414390,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10486496	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs11563322	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563573	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563575	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563576	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333740	1.00[EUR][1000 genomes]
rs12534334	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12540654	0.95[ASN][1000 genomes]
rs17155208	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17449226	1.00[EUR][1000 genomes]
rs17449448	1.00[EUR][1000 genomes]
rs17449951	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs17449958	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs17449979	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17450021	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17450035	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17450049	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17450069	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17471730	1.00[EUR][1000 genomes]
rs17478714	0.84[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17478742	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17478763	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17478896	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17502782	1.00[EUR][1000 genomes]
rs6973628	0.95[ASN][1000 genomes]
rs6978713	0.86[JPT][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27404800-27415000	Weak transcription	Right Atrium	heart
2	chr7:27412200-27415000	Weak transcription	A549	lung
3	chr7:27412400-27414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:27412400-27414600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:27412400-27415600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:27412600-27414200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:27412600-27414800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:27412600-27416000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:27412600-27416600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:27412600-27416600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:27412800-27414800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:27413000-27414200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:27414000-27414600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:27414000-27415200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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