Variant report

Variant	rs12333740
Chromosome Location	chr7:27458173-27458174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10226397	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10486496	1.00[EUR][1000 genomes]
rs11563322	1.00[EUR][1000 genomes]
rs11563573	1.00[EUR][1000 genomes]
rs11563575	1.00[EUR][1000 genomes]
rs11563576	1.00[EUR][1000 genomes]
rs12534334	1.00[EUR][1000 genomes]
rs17155208	1.00[EUR][1000 genomes]
rs17449448	1.00[EUR][1000 genomes]
rs17449951	1.00[EUR][1000 genomes]
rs17449958	1.00[EUR][1000 genomes]
rs17449979	1.00[EUR][1000 genomes]
rs17450021	1.00[EUR][1000 genomes]
rs17450035	1.00[EUR][1000 genomes]
rs17450049	1.00[EUR][1000 genomes]
rs17450104	1.00[EUR][1000 genomes]
rs17471730	1.00[EUR][1000 genomes]
rs17478714	1.00[EUR][1000 genomes]
rs17478742	1.00[EUR][1000 genomes]
rs17478763	1.00[EUR][1000 genomes]
rs17478896	1.00[EUR][1000 genomes]
rs17502782	1.00[EUR][1000 genomes]
rs73283996	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27456600-27458200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:27457600-27458800	Enhancers	Spleen	Spleen
3	chr7:27457800-27458800	Enhancers	HUVEC	blood vessel
4	chr7:27458000-27458200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:27458000-27459200	Enhancers	Pancreas	Pancrea
6	chr7:27458000-27461000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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