Variant report

Variant	rs17455708
Chromosome Location	chr2:10926767-10926768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10924985..10929288-chr2:10932246..10936170,4	MCF-7	breast:
2	chr2:10925512..10928400-chr2:10950746..10952997,2	K562	blood:
3	chr2:10923480..10926875-chr2:10926902..10929913,3	K562	blood:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1198844	0.86[CEU][hapmap]
rs12463454	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12464402	0.87[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12464513	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12471725	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12471762	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12472302	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12475790	0.80[ASN][1000 genomes]
rs12623588	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13429247	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13431633	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13432104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17365181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17365209	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17365216	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17456162	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17456225	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2046793	0.83[EUR][1000 genomes]
rs2306922	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2357815	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2884289	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3856465	0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3856466	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55648622	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55675740	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55906240	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55975412	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56093996	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56140102	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56143168	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56147885	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56162318	0.90[AFR][1000 genomes]
rs56195743	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56260452	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56264212	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56268818	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72777388	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72777393	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72779425	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72779433	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72779445	0.80[ASN][1000 genomes]
rs72779451	0.90[AFR][1000 genomes]
rs72779452	0.90[AFR][1000 genomes]
rs72779466	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv580968	chr2:10923268-10933249	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10914600-10931600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:10915600-10939800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:10915600-10950400	Weak transcription	Right Atrium	heart
4	chr2:10915800-10929000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:10916200-10939200	Strong transcription	Fetal Stomach	stomach
6	chr2:10916400-10928600	Strong transcription	Fetal Intestine Small	intestine
7	chr2:10916400-10931200	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:10916400-10931600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:10916400-10938600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:10916600-10943800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:10916800-10933800	Strong transcription	Spleen	Spleen
12	chr2:10916800-10937400	Strong transcription	Lung	lung
13	chr2:10916800-10942400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:10917000-10930400	Strong transcription	GM12878-XiMat	blood
15	chr2:10917000-10930600	Strong transcription	NHEK	skin
16	chr2:10917000-10933600	Strong transcription	Primary T cells from cord blood	blood
17	chr2:10917000-10939400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:10917200-10929000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr2:10917200-10931000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:10917200-10931000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:10917200-10933400	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:10917200-10933400	Strong transcription	NHLF	lung
23	chr2:10917200-10934200	Strong transcription	Adipose Nuclei	Adipose
24	chr2:10917200-10937800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr2:10917200-10937800	Strong transcription	Thymus	Thymus
26	chr2:10917200-10939000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:10917200-10942800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:10917200-10943200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:10917200-10943200	Strong transcription	Fetal Thymus	thymus
30	chr2:10917400-10930400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr2:10917400-10941200	Strong transcription	Liver	Liver
32	chr2:10917400-10942400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr2:10917600-10930400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:10917600-10930600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr2:10917600-10939200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr2:10917600-10943200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:10917600-10943200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:10917600-10943200	Strong transcription	Fetal Muscle Leg	muscle
39	chr2:10917800-10937800	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:10917800-10942800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr2:10917800-10943200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr2:10917800-10943200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr2:10917800-10943200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr2:10917800-10944400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr2:10918000-10929200	Strong transcription	Colonic Mucosa	Colon
46	chr2:10918000-10938200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr2:10918000-10942400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr2:10918000-10942600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:10918200-10928200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr2:10918200-10929000	Strong transcription	Pancreas	Pancrea

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