Variant report

Variant	rs72779445
Chromosome Location	chr2:10957707-10957708
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:10957620-10957770	GM12867	blood:	n/a	chr2:10957702-10957711
2	CTCF	chr2:10957700-10957850	HCT-116	colon:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
3	RAD21	chr2:10957588-10957950	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr2:10957631-10957791	MCF-7	breast:	n/a	chr2:10957702-10957711
5	CTCF	chr2:10957650-10957778	GM13976	blood:	n/a	chr2:10957702-10957711
6	CTCF	chr2:10957660-10957810	HVMF	connective:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
7	CTCF	chr2:10957660-10957810	HRE	kidney:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
8	CTCF	chr2:10957700-10957850	HFF-Myc	foreskin:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
9	CTCF	chr2:10957642-10957784	GM19239	blood:	n/a	chr2:10957702-10957711
10	CTCF	chr2:10957660-10957810	WERI-Rb-1	eye:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
11	CTCF	chr2:10957660-10957810	A549	lung:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
12	CTCF	chr2:10957640-10957790	HMF	breast:	n/a	chr2:10957702-10957711
13	CTCF	chr2:10957580-10957730	AG09319	gingival:	n/a	chr2:10957702-10957711
14	CTCF	chr2:10957660-10957810	HRPEpiC	eye:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
15	CTCF	chr2:10957640-10957790	RPTEC	kidney:	n/a	chr2:10957702-10957711
16	CTCF	chr2:10957700-10957850	HEEpiC	esophagus:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
17	CTCF	chr2:10957680-10957830	NHEK	skin:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
18	MYC	chr2:10957578-10957713	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr2:10957560-10957710	GM12865	blood:	n/a	n/a
20	CTCF	chr2:10957631-10957807	Hela-S3	cervix:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
21	CTCF	chr2:10957672-10957795	LNCaP	prostate:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
22	CTCF	chr2:10957595-10957825	HepG2	liver:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
23	CTCF	chr2:10957620-10957770	AG09309	skin:	n/a	chr2:10957702-10957711
24	CTCF	chr2:10957585-10957847	H1-hESC	embryonic stem cell:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
25	CTCF	chr2:10957620-10957770	HAc	cerebellar:	n/a	chr2:10957702-10957711
26	CTCF	chr2:10957620-10957770	SAEC	small airway:	n/a	chr2:10957702-10957711
27	CTCF	chr2:10957620-10957770	NHDF-neo	bronchial:	n/a	chr2:10957702-10957711
28	CTCF	chr2:10957580-10957730	BJ	skin:	n/a	chr2:10957702-10957711
29	EP300	chr2:10957577-10957714	HepG2	liver:	n/a	n/a
30	JUND	chr2:10957653-10957827	H1-hESC	embryonic stem cell:	n/a	n/a
31	ARID3A	chr2:10957620-10957820	HepG2	liver:	n/a	n/a
32	CTCF	chr2:10957640-10957790	HCT-116	colon:	n/a	chr2:10957702-10957711
33	CTCF	chr2:10957700-10957850	WI-38	lung:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
34	CTCF	chr2:10957600-10957750	AG04450	lung:	n/a	chr2:10957702-10957711
35	CTCF	chr2:10957521-10957906	H1-hESC	embryonic stem cell:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
36	CTCF	chr2:10957547-10957880	IMR90	lung:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
37	CTCF	chr2:10957640-10957790	GM12864	blood:	n/a	chr2:10957702-10957711
38	CTCF	chr2:10957560-10957710	GM12864	blood:	n/a	n/a
39	CTCF	chr2:10957640-10957790	HEK293	kidney:	n/a	chr2:10957702-10957711
40	CTCF	chr2:10957295-10958035	SK-N-SH	brain:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
41	CTCF	chr2:10957660-10957810	NHEK	skin:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
42	CTCF	chr2:10957620-10957770	K562	blood:	n/a	chr2:10957702-10957711
43	CTCF	chr2:10957680-10957830	HMEC	breast:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
44	CTCF	chr2:10957640-10957790	HMEC	breast:	n/a	chr2:10957702-10957711
45	CTCF	chr2:10957680-10957830	RPTEC	kidney:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
46	CTCF	chr2:10957680-10957830	GM12875	blood:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
47	CTCF	chr2:10957620-10957770	Hela-S3	cervix:	n/a	chr2:10957702-10957711
48	CTCF	chr2:10957326-10957913	A549	lung:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
49	CTCF	chr2:10957640-10957790	HEEpiC	esophagus:	n/a	chr2:10957702-10957711
50	RAD21	chr2:10957515-10957840	SK-N-SH_RA	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10951755..10953479-chr2:10956167..10958157,2	K562	blood:

Variant related genes	Relation type
PDIA6	TF binding region
RNU7-176P	TF binding region
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs12463454	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12472302	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12474895	0.91[ASN][1000 genomes]
rs12475790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621237	0.91[ASN][1000 genomes]
rs12623588	0.91[ASN][1000 genomes]
rs13429247	0.81[ASN][1000 genomes]
rs13431633	0.81[ASN][1000 genomes]
rs13431852	0.81[ASN][1000 genomes]
rs13432104	0.81[ASN][1000 genomes]
rs17365181	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17365209	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17365216	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17455708	0.80[ASN][1000 genomes]
rs17456162	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17456225	0.81[ASN][1000 genomes]
rs2306922	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2357815	0.81[ASN][1000 genomes]
rs2884289	0.81[ASN][1000 genomes]
rs3856466	0.85[ASN][1000 genomes]
rs55648622	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55675740	0.85[ASN][1000 genomes]
rs55688940	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55770944	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55771723	0.81[ASN][1000 genomes]
rs55863332	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55968911	0.81[ASN][1000 genomes]
rs55975412	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56025654	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56093996	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56121730	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56140102	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56141717	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56143168	0.85[ASN][1000 genomes]
rs56147885	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56162318	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56260452	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56263234	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56264212	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56268818	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56321198	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56344711	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59737886	0.81[ASN][1000 genomes]
rs72777393	0.85[ASN][1000 genomes]
rs72779425	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779433	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779451	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779452	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779453	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779459	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779464	0.81[ASN][1000 genomes]
rs72779466	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779469	0.81[ASN][1000 genomes]
rs72779470	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779474	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779478	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7571007	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7576898	0.81[ASN][1000 genomes]
rs7587453	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7590368	0.81[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10957800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:10953600-10959200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:10953600-10960800	Weak transcription	Brain Substantia Nigra	brain
4	chr2:10953600-10960800	Weak transcription	Left Ventricle	heart
5	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10953800-10960800	Weak transcription	Spleen	Spleen
7	chr2:10955000-10960600	Weak transcription	Stomach Mucosa	stomach
8	chr2:10955200-10958600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:10955400-10958800	Weak transcription	HUVEC	blood vessel
10	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:10955600-10960800	Weak transcription	Adipose Nuclei	Adipose
12	chr2:10957600-10957800	Bivalent Enhancer	Hela-S3	cervix
13	chr2:10957600-10959000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links