Variant report

Variant	rs7590368
Chromosome Location	chr2:10961474-10961475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10958052..10959606-chr2:10959996..10962869,2	MCF-7	breast:
2	chr2:10951768..10957623-chr2:10961230..10967037,7	K562	blood:
3	chr2:10958613..10961518-chr2:10969004..10971574,2	K562	blood:
4	chr2:10951471..10954573-chr2:10958000..10962008,6	MCF-7	breast:
5	chr2:10954765..10957047-chr2:10960412..10962709,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction
ENSG00000238962	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10192112	0.82[AFR][1000 genomes]
rs10197595	0.82[AFR][1000 genomes]
rs10200007	0.82[AFR][1000 genomes]
rs12463454	0.81[ASN][1000 genomes]
rs12471725	0.81[ASN][1000 genomes]
rs12471762	0.81[ASN][1000 genomes]
rs12474895	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12475790	0.81[ASN][1000 genomes]
rs12621237	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12623588	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13404780	0.82[AFR][1000 genomes]
rs13429247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431633	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432104	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17456225	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357816	0.82[AFR][1000 genomes]
rs2884289	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688940	0.91[ASN][1000 genomes]
rs55770944	0.91[ASN][1000 genomes]
rs55771723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55863332	0.88[ASN][1000 genomes]
rs55968911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55975412	0.81[ASN][1000 genomes]
rs56025654	0.91[ASN][1000 genomes]
rs56121730	0.91[ASN][1000 genomes]
rs56141717	0.91[ASN][1000 genomes]
rs56162318	0.86[ASN][1000 genomes]
rs56260452	0.81[ASN][1000 genomes]
rs56263234	0.91[ASN][1000 genomes]
rs56268818	0.81[ASN][1000 genomes]
rs56321198	0.91[ASN][1000 genomes]
rs56344711	0.91[ASN][1000 genomes]
rs59737886	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779445	0.81[ASN][1000 genomes]
rs72779451	0.91[ASN][1000 genomes]
rs72779452	0.91[ASN][1000 genomes]
rs72779453	0.91[ASN][1000 genomes]
rs72779459	0.91[ASN][1000 genomes]
rs72779464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779466	0.91[ASN][1000 genomes]
rs72779469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779470	0.91[ASN][1000 genomes]
rs72779474	0.91[ASN][1000 genomes]
rs72779478	0.91[ASN][1000 genomes]
rs7571007	0.91[ASN][1000 genomes]
rs7576898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7587453	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3444752	chr2:10961415-10961838	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:10960800-10961600	Enhancers	Fetal Muscle Leg	muscle
4	chr2:10960800-10961800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:10960800-10962000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr2:10961000-10961600	Flanking Active TSS	Stomach Mucosa	stomach
7	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
8	chr2:10961400-10961600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:10961400-10968600	Weak transcription	Gastric	stomach

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